Erkan Tüzel

Assistant Professor

31. (31)“Motor transport of self-assembled cargos in crowded environments”, Leslie Conway, Derek Wood, Erkan Tüzel, Jennifer. L. Ross, Proc. Natl. Acad. Sci. USA, (2012), accepted for publication.
    

30. (30)“Apical myosin XI anticipates F-actin during polarized growth of Physcomitrella patens cells”, Fabienne Furt, Yen-Chun Liu, Jeffrey P. Bibeau, Erkan Tüzel,  and Luis Vidali, Plant Journal, (2012), accepted for publication.
    

29. (29)Quantitative analysis of organelle distribution and dynamics in physcomitrella patens protonemal Cells, Fabienne Furt, Kyle Lemoi, Erkan Tüzel, and Luis Vidali, BMC Plant Biology 12, 70 (2012).
    

28. (28)“Organelle dynamics: a tale of fusing nucleoli”, Erkan Tüzel, Current Biology 21, R395-R397 (2011) (Dispatch).
    

27. (27)“Actin interacting protein1 and actin depolymerizing factor drive rapid actin dynamics in physcomitrella patens”, Robert C. Augustine, Kelli A. Pattavina, Erkan Tüzel, Luis Vidali, and Magdalena Bezanilla, Plant Cell 23, 3696 (2011).
    

26. (26)“Loop formation in microtubules during gliding at high density”, Lynn Liu, Erkan Tüzel, and Jennifer L. Ross, J. Phys.: Condens. Matter, J. Phys.: Condens. Matter 23, 374104 (2011). (Featured in IOP's “Lab talk”)
    

25. (25)“Myosin XI is essential for tip growth”, Luis Vidali, Graham Burkart, Robert C. Augustine, Erin Kerdavid, Erkan Tüzel and Magdalena Bezanilla, Plant Cell 22, 1868 (2010).
    

24. (24)Dynamics of thermally-driven capillary waves for two-dimensional droplets”, Erkan Tüzel, Guoai Pan and Daniel M. Kroll, “ J. Chem. Phys 132, 174701 (2010). An image from the paper has been chosen as the journal cover. Here is a link to the issue.
    

23. (23)“Taking another look with fluorescence microscopy: image processing techniques in Langmuir monolayers for the twenty-first century”, Benjamin L. Stottrup, Andrew H. Nguyen, Erkan Tüzel, Biochimica et Biophysica Acta (BBA) - Biomembranes, in press.
    

22. (22)“Anterograde microtubule transport drives microtubule bending in LLC-PK1 epithelial cells”, Andrew D. Bicek* , Erkan Tüzel*, Aleksey Demtchouk, Maruti Uppalapati , William O. Hancock, Daniel M. Kroll, and David J. Odde,  Mol. Biol. Cell. 20, 2943 (2009).  *These authors contributed equally to this work.
    

21. (21)"Static and dynamic properties of a particle-based algorithm for non-ideal fluids and binary mixtures", Thomas Ihle, Erkan Tüzel, , Prog. Comp. Fluid Dyn. 8, 138 (2008).
    

20. (20)“Mesoscopic model for the fluctuating hydrodynamics of binary and ternary mixtures”, Erkan Tüzel, Guoai Pan, Thomas Ihle, Daniel M. Kroll, , Europhys. Lett. 80, 40010 (2007).
    

19. (19)"Analysis of microtubule curvature", Andrew D. Bicek, Erkan Tüzel, Daniel M. Kroll, David J. Odde, , Ed. Y. Wang and D. Discher, Methods in Cell Biology 83, 237 (2007).
    

18. (18)"Dynamic correlations in stochastic rotation dynamics", Erkan Tüzel, Thomas Ihle, Daniel M. Kroll, , Phys. Rev. E 74, 056702 (2006). (PDF)
    

17. (17)"Constructing thermodynamically consistent models with a non-ideal equation of state", Erkan Tüzel, Thomas Ihle, Daniel M. Kroll, , Math. Comput. Simulat. 72, 232 (2006).
    

16. (16)"Consistent particle-based algorithm with a non-ideal equation of state", Thomas Ihle, Erkan Tüzel, Daniel M. Kroll,  Europhys. Lett. 73, 664 (2006).
    

15. (15)"Equilibrium calculation of transport coefficients for a fluid-particle model", Thomas Ihle, Erkan Tüzel, Daniel M. Kroll, , Phys. Rev. E 72, 046707 (2005). (PDF)
    

14. (14)"Resummed Green-Kubo relations for a fluctuating fluid-particle model", Thomas Ihle, Erkan Tüzel, Daniel M. Kroll, , Phys. Rev. E 70, 035701 (2004). (PDF)
    

13. (13)"A thermodynamic model for prebiotic protein function", Erkan Tüzel, Ayşe Erzan, , ARI, Bull. ITU, 54/1, 19 (2004).
    

12. (12)"Transport coefficients for stochastic rotation dynamics in three dimensions", Erkan Tüzel, Martin Strauss, Thomas Ihle, Daniel M. Kroll, , Phys. Rev. E 68, 036701 (2003). (PDF)
    

11. (11)"Hydrophobic models of protein folding and the thermodynamics of chain-boundary interactions", Ayşe Erzan, Erkan Tüzel , Braz. J. Phys., vol. 33/3, p.573-588 (2003).
    

10. (10)"Monitoring Diffusion of Reptating Polymer Chains by Direct Energy Transfer Method: a Monte Carlo Simulation in Three Dimension", Erkan Tüzel, K. Batuhan Kısacıkoğlu, Önder Pekcan, , Macromol. Theory Simul. Vol.11, 678-686 (2002).
    

9. (9)"Evolutionary Route to Diploidy and Sex", Erkan Tüzel, Volkan Sevim, Ayşe Erzan , Proc. Natl. Acad. Sci. USA, Vol. 98, Issue 24, 13774-13777, (2001).
   

8. (8)"Strategies for the Evolution of Sex", Erkan Tüzel, Volkan Sevim, Ayşe Erzan, , Phys. Rev. E 64, 061908 (2001). (PDF)
   

7. (7)"Testing a Hypothesis for the Evolution of Sex", Bora Örçal, Erkan Tüzel, Volkan Sevim, Naeem Jan, Ayşe Erzan, Int. J. Mod. Phys. C, 11/5, 973-986 (2000).
   

6. (6)"The Dissipative Dynamics and Relaxation Behaviour of a Generic Model for Hydrophobic Collapse", Erkan Tüzel, Ayşe Erzan, , Annual Reviews of Computational Physics VIII, Ed. D. Stauffer, World Scientific (2000).
   

5. (5)"Dissipative Dynamics and the Statistics of Energy States of a Hookean Model for Protein Folding", Erkan Tüzel, Ayşe Erzan, J. Stat. Phys. 100 (1/2), 405-422 (2000).
   

4. (4)"Glassy dynamics of protein folding", Erkan Tüzel, Ayşe Erzan, Phys. Rev. E, 61, 1040 (2000). (PDF)
   

3. (3)"The statistics of energy states of a hookean model for proteins", Ayşe Erzan, Erkan Tüzel, Turk. J. Phys. 24, 295-310 (2000).
   

2. (2)"Simulation of interdiffusion in between compartments having heterogenously distributed donors and acceptors", Erkan Tüzel, K. Batuhan Kısacıkoğlu, Önder Pekcan, Polymer 41, 7539-7546 (2000).
   

1. (1)"A new critical point and time dependence of bond formation probability in sol-gel transition: a Monte Carlo study in two dimensions", Erkan Tüzel, M. Serdar Özmetin, Yaşar Yılmaz, Önder Pekcan, European Polym. J., Vol. 36/4, 727 (2000).